PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08769
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 237aa    MW: 28014.1 Da    PI: 4.9518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08769genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-1883169184
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f k+lt+s v+++++l+lp + + ++      +++   ++ l ++d+ +rsW +++ y    +++v+t+GW++Fv++ +L+++D+vvF++
  PEQU_08769  83 FHKQLTSSEVGEQKMLMLPINQVIRFfqdvvvDKV---EISLEFQDKMNRSWVFRCDYLHDIQSHVFTTGWNKFVNEMKLRANDIVVFYR 169
                 89********************9999988754333...45799999999*********999999************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-2081172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1682170IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1382169No hitNo description
SMARTSM010191.3E-783183IPR003340B3 DNA binding domain
PROSITE profilePS5086310.30683190IPR003340B3 DNA binding domain
PfamPF023622.2E-1583170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKFLKDDFIR NFLLTDITIH EPLFQNHFSD EAILEMILDG SYEPRFIDFV RNILRPNYSV  60
DSGSIALPSA SNVFDGAFVR EMFHKQLTSS EVGEQKMLML PINQVIRFFQ DVVVDKVEIS  120
LEFQDKMNRS WVFRCDYLHD IQSHVFTTGW NKFVNEMKLR ANDIVVFYRC LDYKKCFGKS  180
FDMIDIIRDF KSNGSIMVDE SREKPTEFDE KEGKSKEMVE VKETEEQPKF KLFGSWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-1581171697B3 domain-containing transcription factor NGA1
5os9_B1e-1581171697B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585971.11e-175AP2/ERF and B3 domain-containing transcription factor At1g50680-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-32RAV family protein