PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08770

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 162aa MW: 19466.6 Da PI: 8.2981

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08770	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.6e-19	55	145	1	90
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+l+ d+ ++ lvlp + + + ++k+ es l+++d+++r+W +k++yr + ++y+lt+GW F+++ +L+++D+vvF++++ + + PEQU_08770 55 FHKKLILTDMENKEVLVLPYQAL-FYlpsfNSKTVES-WLMFKDRTNRKWAFKYCYRSNNCSYILTTGWGTFADEMELCVNDIVVFYRSR-DWG 145 8899999************99.7789975555555.9**********************************************765.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-19	53	145	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.43E-12	54	143	No hit	No description
SuperFamily	SSF101936	6.93E-17	54	144	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.7E-16	55	145	IPR003340	B3 DNA binding domain
SMART	SM01019	6.3E-6	55	155	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.306	55	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MYTKEAIIDM IRDGSYEPKF MEFIWIHHPN FRYSGFVAWP TSLDTIHGVL FKEMFHKKLI 60 LTDMENKEVL VLPYQALFYL PSFNSKTVES WLMFKDRTNR KWAFKYCYRS NNCSYILTTG 120 WGTFADEMEL CVNDIVVFYR SRDWGRCPTR IFYVVDIIRG VI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585976.1	9e-99	AP2/ERF and B3 domain-containing transcription factor At1g51120-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-18	RAV family protein