PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08771

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 190aa MW: 22147 Da PI: 4.6722

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08771	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.6e-22	56	144	1	90
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f kvlt+sdv +++l+lp++ a +h ++ l ++++ +W +++ y+k+ ++yv+t+GW++Fvka +L++ D+vvF++ + PEQU_08771 56 FHKVLTSSDVDDRSILTLPREAAMQHfpqlkP--DSIEIPLEFTNLGRVTWVFQYGYSKSCQSYVFTTGWSRFVKAMKLRADDSVVFYRC----T 144 89***********************95321..23455678889999**************************************43....2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-24	54	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.22E-21	55	150	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.30E-18	55	142	No hit	No description
Pfam	PF02362	1.5E-18	56	144	IPR003340	B3 DNA binding domain
SMART	SM01019	5.5E-14	56	160	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.814	56	160	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MIRDGSYEPK FIEDGVYETK FVEFVRNLLS IPDDRDWIRL PDRTDALDNV WIREMFHKVL 60 TSSDVDDRSI LTLPREAAMQ HFPQLKPDSI EIPLEFTNLG RVTWVFQYGY SKSCQSYVFT 120 TGWSRFVKAM KLRADDSVVF YRCTELENSV RKHFYLIDMI FSVKSEHEDV AEEPAEVGGD 180 IDRPSGSGEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-16	54	144	6	97	B3 domain-containing transcription factor NGA1
5os9_B	2e-16	54	144	6	97	B3 domain-containing transcription factor NGA1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585904.1	1e-129	putative AP2/ERF and B3 domain-containing protein Os01g0140700

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-18	related to ABI3/VP1 2