PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09007
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family WRKY
Protein Properties Length: 100aa    MW: 11584.2 Da    PI: 9.0304
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.71.8e-211472259
                --SS-EEEEEEE--TT.-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkg.sefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                +D+y+W KYGqK +k   +  rsY++C  ++C +kkkve + ++p+ v + Yeg Hnh+
  PEQU_09007 14 KDEYEWNKYGQKLIKRiGNKYRSYFKCRKKDCGAKKKVEWAPSNPSNVRVLYEGVHNHQ 72
                7*************9623456*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.432874IPR003657WRKY domain
SuperFamilySSF1182902.35E-191072IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-211172IPR003657WRKY domain
SMARTSM007742.9E-191373IPR003657WRKY domain
PfamPF031061.0E-181472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
GGDDEQIPAI VIPKDEYEWN KYGQKLIKRI GNKYRSYFKC RKKDCGAKKK VEWAPSNPSN  60
VRVLYEGVHN HQRYIIDSDP VDLAAMIHAN QYDLVTQIFG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579875.16e-71probable WRKY transcription factor 24
SwissprotQ9ZQ703e-13WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2I0WRS01e-45A0A2I0WRS0_9ASPA; Protein WRKY1
STRINGOS03T0657400-001e-26(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-08WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]