PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_09069

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 308aa MW: 35019.9 Da PI: 7.1651

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09069	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.2	1.8e-54	21	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +k +++++ +i evd++k+ePwdLpk++k +ekewyfF+ rd+ky+tg r+nrat +gyWkatgkdke+++ ++ l PEQU_09069 21 LPPGFRFHPTDEELITYYLSNKFVDSRFKS-LAIGEVDLNKCEPWDLPKHAKLGEKEWYFFCVRDRKYPTGLRTNRATVAGYWKATGKDKEIHR-GELL 117 79***********************999.67***********99999*************************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grap+gek++Wvmheyrle PEQU_09069 118 VGMKKTLVFYTGRAPRGEKSSWVMHEYRLE 147 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-62	16	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.622	21	171	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	22	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEKRALSTSN GQKGTADQML LPPGFRFHPT DEELITYYLS NKFVDSRFKS LAIGEVDLNK 60 CEPWDLPKHA KLGEKEWYFF CVRDRKYPTG LRTNRATVAG YWKATGKDKE IHRGELLVGM 120 KKTLVFYTGR APRGEKSSWV MHEYRLEGKY CINSLHRAAK SEWVICRVFK KSSLGNAFGM 180 GKMASSSFGE EIEDSPPPPP PPNTLPPLMD IPTHVPCFSN GMEGQKAHDQ DMSSLFFSNL 240 IPMPTSLYDG SFMSLFESHG FDEKYGCKKD RDMLNFSDEI GLAAEMNAQI YCDNEFGRSS 300 FENCLWNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	18	173	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	18	173	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	18	173	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	18	173	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	18	173	17	170	NAC domain-containing protein 19
3swm_B	1e-51	18	173	17	170	NAC domain-containing protein 19
3swm_C	1e-51	18	173	17	170	NAC domain-containing protein 19
3swm_D	1e-51	18	173	17	170	NAC domain-containing protein 19
3swp_A	1e-51	18	173	17	170	NAC domain-containing protein 19
3swp_B	1e-51	18	173	17	170	NAC domain-containing protein 19
3swp_C	1e-51	18	173	17	170	NAC domain-containing protein 19
3swp_D	1e-51	18	173	17	170	NAC domain-containing protein 19
4dul_A	1e-51	18	173	14	167	NAC domain-containing protein 19
4dul_B	1e-51	18	173	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020579757.1	0.0	NAC domain-containing protein 92-like
Refseq	XP_020579758.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-93	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2I0X8K9	1e-180	A0A2I0X8K9_9ASPA; NAC domain-containing protein 100
STRING	XP_008802569.1	1e-110	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	8e-95	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]