PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_09073

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 111aa MW: 12773.2 Da PI: 10.4461

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09073	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.2	3.3e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++s rqvt+skRr+gilKK +EL +LCd+++++++fs+tgk PEQU_09073 10 KLESTSGRQVTYSKRRAGILKKSKELAILCDIDILLLMFSPTGK 53 6799**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-27	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.549	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MGRVKLKIKK LESTSGRQVT YSKRRAGILK KSKELAILCD IDILLLMFSP TGKPTLCYGE 60 RSNIEEVLAK FVQLTPQERL KRKLECLEAL KKTFKKLDHD INISDFLGSR Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-13	1	92	1	90	MEF2C
5f28_B	3e-13	1	92	1	90	MEF2C
5f28_C	3e-13	1	92	1	90	MEF2C
5f28_D	3e-13	1	92	1	90	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020579727.1	1e-70	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_020579728.1	1e-70	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_020579729.1	1e-70	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_020579730.1	1e-70	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_020579731.1	1e-70	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_020579732.1	1e-70	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	6e-55	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2H3YRH8	6e-61	A0A2H3YRH8_PHODC; agamous-like MADS-box protein AGL65 isoform X1
TrEMBL	A0A3Q0IAZ0	5e-61	A0A3Q0IAZ0_PHODC; agamous-like MADS-box protein AGL65 isoform X2
STRING	XP_008802579.1	9e-62	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	4e-47	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]