PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09074
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 229aa    MW: 26726 Da    PI: 6.9624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09074genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-173681147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W +eEd +l+ +v  +G+ +W++Ia++++ gR++k+c++rw++ 
       PEQU_09074 36 RGHWRPEEDSKLKALVSIYGPQNWNLIAEKLN-GRSGKSCRLRWFNQ 81
                     899*****************************.***********996 PP
2Myb_DNA-binding53.17.4e-1788131146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+ E+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
       PEQU_09074  88 RSAFTEVEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 131
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0883182IPR017930Myb domain
SMARTSM007175.2E-153584IPR001005SANT/Myb domain
PfamPF002491.3E-163681IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-2836129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-253789IPR009057Homeodomain-like
CDDcd001676.39E-133980No hitNo description
PROSITE profilePS5129424.75583137IPR017930Myb domain
SMARTSM007171.6E-1387135IPR001005SANT/Myb domain
PfamPF002491.7E-1388130IPR001005SANT/Myb domain
CDDcd001675.89E-1090130No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2090136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGTSETNEVL EENLSRADAE EENINESLGQ SNLCARGHWR PEEDSKLKAL VSIYGPQNWN  60
LIAEKLNGRS GKSCRLRWFN QLDPTINRSA FTEVEEEKLM AAHRLYGNKW AMIARLFPGR  120
TDNAVKNHWH VIMARKYREQ SNAYRRRKLS QAMDRRLEEI TPNHPFFSSS IVDYSSSSFH  180
LFPNGENNSL LSHFGSYTEE KPFDFYSGMF YLFLAVLFLA IVQDWLFYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33351366107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579779.11e-154transcription factor MYB52-like
SwissprotQ9SEZ42e-71MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2I0WDZ71e-131A0A2I0WDZ7_9ASPA; Transcription factor MYB44
STRINGXP_008802623.18e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-73myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]