PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09152
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 172aa    MW: 20316.9 Da    PI: 6.6791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09152genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-18754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed++lv+ v+ +G ++W+ Ia+  g+ Rt+k+c++rw +yl
       PEQU_09152  7 RGPWTEQEDLQLVCFVRIFGDRRWDFIANLSGLERTGKSCRLRWVNYL 54
                     89********************************************97 PP
2Myb_DNA-binding54.92.1e-1761105248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr+T+eE+ l+++++ ++G++ W+ Ia +++ gRt++++k++w++++
       PEQU_09152  61 GRMTPEEEHLILELHSKWGNK-WSQIAGKLP-GRTDNEIKNYWRTHM 105
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.463254IPR017930Myb domain
SuperFamilySSF466891.48E-305101IPR009057Homeodomain-like
SMARTSM007178.6E-15656IPR001005SANT/Myb domain
PfamPF002493.5E-16754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-20861IPR009057Homeodomain-like
CDDcd001673.64E-10954No hitNo description
PROSITE profilePS5129424.89255109IPR017930Myb domain
SMARTSM007179.9E-1559107IPR001005SANT/Myb domain
PfamPF002498.8E-1661104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2562107IPR009057Homeodomain-like
CDDcd001672.03E-962105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKEGTRRGPW TEQEDLQLVC FVRIFGDRRW DFIANLSGLE RTGKSCRLRW VNYLHPGLKH  60
GRMTPEEEHL ILELHSKWGN KWSQIAGKLP GRTDNEIKNY WRTHMRKMAQ EKKRNSPSSS  120
SSSSSFSNGM ENQEEVSFIV TMAEEKEEEV KVEVYPMDQL WNEMEFSSVW EC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2771074103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577748.11e-126myb-related protein MYBAS2-like
SwissprotQ9LX821e-68MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2I0X4M17e-77A0A2I0X4M1_9ASPA; Myb-related protein MYBAS2
STRINGXP_008457537.11e-70(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-67myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]