PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09386
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 174aa    MW: 20490 Da    PI: 7.6767
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09386genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.3e-2064117356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t+eq++ Le+ Fe ++++  e++ +LAkklgL+ rqV vWFqNrRa++k
  PEQU_09386  64 KKRRLTTEQVQLLERSFETENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWK 117
                 45689************************************************9 PP
2HD-ZIP_I/II135.22.2e-4363154192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++ydal +++++L k++++Lr++++
   PEQU_09386  63 EKKRRLTTEQVQLLERSFETENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWKTKQLESDFDRLKSSYDALLADHDSLLKDNDRLRSQVR 154
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.2259119IPR001356Homeobox domain
SMARTSM003892.5E-1962123IPR001356Homeobox domain
SuperFamilySSF466892.74E-1962129IPR009057Homeodomain-like
PfamPF000461.1E-1764117IPR001356Homeobox domain
CDDcd000866.83E-1664120No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2165126IPR009057Homeodomain-like
PRINTSPR000311.6E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000311.6E-699115IPR000047Helix-turn-helix motif
PfamPF021835.8E-15119153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MIDYPQFFRF PILEEFKWEF GFGINEGARS VLGFEDGANK RRPFFTTADE LLEEEYYDEQ  60
HPEKKRRLTT EQVQLLERSF ETENKLEPER KSDLAKKLGL QPRQVAVWFQ NRRARWKTKQ  120
LESDFDRLKS SYDALLADHD SLLKDNDRLR SQVRPSFPVS GGRAAPPAST FPTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571187.16e-75homeobox-leucine zipper protein HOX16-like
SwissprotA2X9802e-55HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
SwissprotQ6YWR42e-55HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2I0VLE71e-69A0A2I0VLE7_9ASPA; Homeobox-leucine zipper protein HOX16
STRINGXP_008781998.12e-63(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-56homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]