PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09578
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 196aa    MW: 21777.2 Da    PI: 4.7093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09578genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182577456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++++ +eq+++Le+ F  ++ +  +++++LA++lgL+ rqV vWFqNrRa++k
  PEQU_09578 25 KRRLGTEQVRALEQSFDVENRLEPDRKARLAQELGLQPRQVAVWFQNRRARWK 77
                456789**********************************************9 PP
2HD-ZIP_I/II130.95e-4224115293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl +eqv++LE+sF+ e++Lep+rK++la+eLglqprqvavWFqnrRAR+ktkqlE+d++aLk++ydal+ + ++L++++++L ++l++
   PEQU_09578  24 KKRRLGTEQVRALEQSFDVENRLEPDRKARLAQELGLQPRQVAVWFQNRRARWKTKQLERDFSALKSRYDALRLDYDSLRRDNHSLVAQLSS 115
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.6821979IPR001356Homeobox domain
SMARTSM003892.2E-172283IPR001356Homeobox domain
SuperFamilySSF466896.42E-192381IPR009057Homeodomain-like
CDDcd000862.20E-162480No hitNo description
PfamPF000467.1E-162577IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-193178IPR009057Homeodomain-like
PRINTSPR000312.7E-65059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000312.7E-65975IPR000047Helix-turn-helix motif
PfamPF021831.3E-1679120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MIFEDDNEDG ICSGSIAATV AAMKKRRLGT EQVRALEQSF DVENRLEPDR KARLAQELGL  60
QPRQVAVWFQ NRRARWKTKQ LERDFSALKS RYDALRLDYD SLRRDNHSLV AQLSSLKSKL  120
AGEDDVKQGK EKPQPAIGAE GACESDSSAV LNLDLFKVEE EGWEESCGAG LFVDEHGSTL  180
AWFSAELAAG EGGASW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14854DRKARLA
27179RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580915.11e-141homeobox-leucine zipper protein HOX20-like
SwissprotA2YWC02e-50HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2482e-50HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2I0W4501e-101A0A2I0W450_9ASPA; Homeobox-leucine zipper protein HOX20
STRINGOBART08G18330.19e-51(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-48homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]