PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_09689

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 309aa MW: 34605.1 Da PI: 5.784

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09689	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.6	5e-49	12	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtd+el+++yL kkv+++ + ++i+++d+yk++PwdLp k+ +e ew+fFs+rd+ky++g r+nra+ gyWkatg+dk++l + +++ PEQU_09689 12 LPPGFRFHPTDQELIKCYLSKKVTASLPSNWDIIADIDLYKFNPWDLPGKAFFGEGEWFFFSPRDRKYPNGVRPNRAAGIGYWKATGTDKPILGAgGTQ 110 79********************99988889************77667899*********************************995566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvf+kgr pkg+kt+W+mheyrl PEQU_09689 111 CIGVKKALVFHKGRPPKGTKTEWIMHEYRL 140 6*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-59	7	171	IPR003441	NAC domain
PROSITE profile	PS51005	58.162	12	171	IPR003441	NAC domain
Pfam	PF02365	5.9E-26	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGVNGLVMGS HLPPGFRFHP TDQELIKCYL SKKVTASLPS NWDIIADIDL YKFNPWDLPG 60 KAFFGEGEWF FFSPRDRKYP NGVRPNRAAG IGYWKATGTD KPILGAGGTQ CIGVKKALVF 120 HKGRPPKGTK TEWIMHEYRL LDSKVAAPQS QKQKGGSMRL DDWVLCRVRQ KGNLPAASNE 180 VAETCSPTES AFTVSAQSEE NQEVVMDSTS FTDLDENELL SYLFESQAER ESIGEVLDPA 240 FFMRYSQLSD SRDYVEAQQV GSAKRKQPFG VFDELTLLQP AKRLQCSVDG LFSPADSVSI 300 NQYFPEFFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-64	12	171	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-64	12	171	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-64	12	171	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-64	12	171	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-64	12	171	20	168	NAC domain-containing protein 19
3swm_B	4e-64	12	171	20	168	NAC domain-containing protein 19
3swm_C	4e-64	12	171	20	168	NAC domain-containing protein 19
3swm_D	4e-64	12	171	20	168	NAC domain-containing protein 19
3swp_A	4e-64	12	171	20	168	NAC domain-containing protein 19
3swp_B	4e-64	12	171	20	168	NAC domain-containing protein 19
3swp_C	4e-64	12	171	20	168	NAC domain-containing protein 19
3swp_D	4e-64	12	171	20	168	NAC domain-containing protein 19
4dul_A	3e-64	12	171	17	165	NAC domain-containing protein 19
4dul_B	3e-64	12	171	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575249.1	0.0	NAC transcription factor 29-like
Swissprot	Q8H4S4	3e-73	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A2I0WC73	0.0	A0A2I0WC73_9ASPA; NAC transcription factor 25
STRING	XP_008782049.1	1e-101	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-74	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]