PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_09751

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

TCP

Protein Properties

Length: 253aa MW: 26846.3 Da PI: 5.769

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09751	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.4	1.8e-36	44	124	6	92
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqqa++ai ++tgt++++a ++ +++ +++ +a+ PEQU_09751 44 KRTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQAEHAIFAATGTGTIPAIAT-NVNGT-----LKIPTEAP 124 79**********************************************************99999444.22222.....22222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-30	45	122	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.001	46	100	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:0048364	Biological Process	root development
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGAQEKEMED DNHTSIAGNR QIIPKPEPSD PMGTPLPIIQ IPPKRTKDRH TKVEGRGRRI 60 RMPAACAARI FQLTRELGHK SDGETIRWLL QQAEHAIFAA TGTGTIPAIA TNVNGTLKIP 120 TEAPAAAISE DETGKKRRKL QPMRGSDRAF ISSGGAMSIP AGLAPITPMW AIAGGGAAMI 180 APGGVWMVPS SQMWGFPAGS VVVSDGQGGS PTKGEGKQEL QLMREAAEEE QEGGGEEEEG 240 SREPASEKVP DNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	138	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575223.1	0.0	transcription factor PCF2-like
Swissprot	A2YXQ1	6e-56	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	6e-56	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A1D6ZNE8	0.0	A0A1D6ZNE8_PHAEQ; TCP transcription factor
STRING	XP_008776516.1	3e-65	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	6e-37	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]