PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09821
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GATA
Protein Properties Length: 268aa    MW: 29374.8 Da    PI: 6.1061
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09821genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.5e-18166200135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG+++++ +l
  PEQU_09821 166 CLHCETDKTPQWRAGPMGPKTLCNACGVRFKSGRL 200
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.229160196IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-17160210IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-15162224No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14163198IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.87E-12165207No hitNo description
PfamPF003203.9E-16166200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMAAEEDGRS EETGGNCSAD SCANSFSGGG SQTRFSDELV YRSLADVGLS GELCEPHEEE  60
AELEWLSNFV EDSFSTEELH KHHLISGLKS ASSPPAHANT CPFTASDDLP PFAVEAPLPG  120
KARSKRSRSA PCDWSSRLRL LSKTATKKNK RPSLAALSPS SDGRRCLHCE TDKTPQWRAG  180
PMGPKTLCNA CGVRFKSGRL VPEYRPALSP TFVLSKHSNS HRKVLELRRQ KEIQEQQQFL  240
LPVSNKGAAE EVEDEFLISG GEVSDEWI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575265.10.0GATA transcription factor 9-like
SwissprotP697811e-62GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2I0WYE51e-113A0A2I0WYE5_9ASPA; GATA transcription factor 12
STRINGGSMUA_Achr7P25000_0018e-90(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-57GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]