PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10019
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 153aa    MW: 17426 Da    PI: 9.5102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.5e-13557148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT+eE+  l+ +v ++G+g+W+tI r          R+  ++k++w++ +
       PEQU_10019  5 KQKWTAEEEFALKAGVVKHGSGNWRTILRDPEfsdilFLRSNVDLKDKWRNMR 57
                     79***********************************55***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.513161IPR017930Myb domain
SuperFamilySSF466892.62E-16270IPR009057Homeodomain-like
SMARTSM007172.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-12456IPR009057Homeodomain-like
PfamPF002492.7E-9556IPR001005SANT/Myb domain
CDDcd116601.51E-17657No hitNo description
PROSITE profilePS5150412.784118153IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.85E-5120152IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-5121152IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGAPKQKWTA EEEFALKAGV VKHGSGNWRT ILRDPEFSDI LFLRSNVDLK DKWRNMRVTV  60
NGWSSREKAR VALKKSRTIL KHDDNSLALG TEVENVDREL IDYKPLEISS EVVQTAGLKR  120
SVFKMDDFII EAITCLKEPK GSNKTSIAMY IEV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586653.11e-110single myb histone 6-like
RefseqXP_020586655.11e-110single myb histone 6-like
SwissprotQ8VWK43e-54TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2I0VAF85e-89A0A2I0VAF8_9ASPA; Telomere repeat-binding factor 1
STRINGXP_008784788.12e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-56telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]