PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10463
Common NameMADS6
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24547.3 Da    PI: 9.8047
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10463genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.7e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtfskRrngi+KKA+E+SvLCda+v+++ifss gk++ey+s
  PEQU_10463  9 KRIENSTNRQVTFSKRRNGIMKKAKEISVLCDAQVSLVIFSSLGKMFEYCS 59
                79***********************************************96 PP
2K-box81.32.3e-2771168198
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 yq++sgk+l++ak+e+l+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l+++R+k++++l++  ++ ++ e+e+++ +  L+++ 
  PEQU_10463  71 YQQNSGKKLWDAKHENLSAEIDRIKKENDNMQIELRHLKGEDLNSLNPKELIPIEEALQNGLTSVRDKQMDYLKMLKKNERMLEDENKRLTYLLHQQQ 168
                 899***********************************************************************999999999999999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.744161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-37296IPR002100Transcription factor, MADS-box
CDDcd002651.04E-43280No hitNo description
PRINTSPR004043.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1982161IPR002487Transcription factor, K-box
PROSITE profilePS5129715.11284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIMK KAKEISVLCD AQVSLVIFSS LGKMFEYCSP  60
STTLSKMLEK YQQNSGKKLW DAKHENLSAE IDRIKKENDN MQIELRHLKG EDLNSLNPKE  120
LIPIEEALQN GLTSVRDKQM DYLKMLKKNE RMLEDENKRL TYLLHQQQMA MEGSMRELDI  180
GYHHKDREYA AQMPMTFRVQ PIQPNLQGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20173171MEF2C
5f28_B2e-20173171MEF2C
5f28_C2e-20173171MEF2C
5f28_D2e-20173171MEF2C
6byy_A2e-20175173MEF2 CHIMERA
6byy_B2e-20175173MEF2 CHIMERA
6byy_C2e-20175173MEF2 CHIMERA
6byy_D2e-20175173MEF2 CHIMERA
6bz1_A2e-20175173MEF2 CHIMERA
6bz1_B2e-20175173MEF2 CHIMERA
6bz1_C2e-20175173MEF2 CHIMERA
6bz1_D2e-20175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6782990.0AY678299.1 Phalaenopsis equestris MADS box protein 6 (MADS6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573549.11e-156MADS-box transcription factor 2
SwissprotQ407021e-112MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLQ49P801e-154Q49P80_PHAEQ; MADS box protein 6
TrEMBLQ5XM801e-154Q5XM80_9ASPA; MADS box PI-like protein 9
STRINGXP_008783315.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Tsai WC, et al.
    PeMADS6, a GLOBOSA/PISTILLATA-like gene in Phalaenopsis equestris involved in petaloid formation, and correlated with flower longevity and ovary development.
    Plant Cell Physiol., 2005. 46(7): p. 1125-39
    [PMID:15890679]