PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10550
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 247aa    MW: 27024.5 Da    PI: 8.869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10550genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll  +v  +G ++W+ I++ ++ gR++k+c++rw + 
       PEQU_10550 11 KGSWSPEEDALLMSLVSTHGARNWSQISAGIQ-GRSGKSCRLRWCNQ 56
                     799*****************************.***********985 PP
2Myb_DNA-binding62.31e-1965107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++Tt+Ed ++v+a++++G++ W+tIar ++ gRt++++k++w++ 
       PEQU_10550  65 PFTTQEDRIIVEAHAKHGNK-WATIARLLP-GRTDNSIKNHWNST 107
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.636657IPR017930Myb domain
SuperFamilySSF466891.11E-309104IPR009057Homeodomain-like
SMARTSM007179.2E-141059IPR001005SANT/Myb domain
PfamPF002493.8E-171156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-251264IPR009057Homeodomain-like
CDDcd001675.19E-131355No hitNo description
PROSITE profilePS5129426.4358112IPR017930Myb domain
SMARTSM007173.0E-1662110IPR001005SANT/Myb domain
CDDcd001674.68E-1365108No hitNo description
PfamPF002491.5E-1665107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2465111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDTGEEDDRV KGSWSPEEDA LLMSLVSTHG ARNWSQISAG IQGRSGKSCR LRWCNQLSPD  60
VHHRPFTTQE DRIIVEAHAK HGNKWATIAR LLPGRTDNSI KNHWNSTLRR RRRAEGGASL  120
KVPERSSPDS ESGGKKQCRR ADLNLNLAEP MTPEVGDPVT MLTLSLPGEI PAVAAASAER  180
GRCPGKALLG SPHFMSAMRK MIEEEVQRYM SGLRLDCGGG GGGGGWRRWS LQCAEVGEST  240
QGLILSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3681114107B-MYB
1gv2_A1e-36101113104MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-361011157158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-361011157158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-36101113104C-Myb DNA-Binding Domain
1msf_C2e-36101113104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578218.10.0transcription factor MYB44-like
TrEMBLA0A2I0WQX45e-90A0A2I0WQX4_9ASPA; Transcription factor MYB44
STRINGGorai.012G078200.12e-66(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.17e-53myb domain protein 70