PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10616

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 154aa MW: 17056.6 Da PI: 8.213

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10616	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.9	9.4e-40	26	124	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C lapyfp ++p kf +h++FGasn++k l++lpe++r da+ss+vyeA +r++dPvyG++g i lq+q+e+l+a+la+ ++ PEQU_10616 26 PCAACKILRRRCAAQCLLAPYFPPTEPLKFTTAHHVFGASNIIKSLQELPESQRADAVSSMVYEATVRIKDPVYGCAGAICYLQKQVEELQAQLARSRA 124 7*********************************************************************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.905	25	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-40	26	122	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
STTSSSFSPP LPPHQNPAPR SNYQSPCAAC KILRRRCAAQ CLLAPYFPPT EPLKFTTAHH 60 VFGASNIIKS LQELPESQRA DAVSSMVYEA TVRIKDPVYG CAGAICYLQK QVEELQAQLA 120 RSRAPRAELL AVETQHNHIL ALFCKDFDFC LPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-39	25	119	10	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-39	25	119	10	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578233.1	1e-109	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-55	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	4e-55	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2I0VRM6	8e-76	A0A2I0VRM6_9ASPA; LOB domain-containing protein 11
STRING	XP_008789049.1	1e-61	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-57	LOB domain-containing protein 1