PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10674

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 258aa MW: 28405.8 Da PI: 5.3459

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10674	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.9	5.5e-16	34	94	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ PEQU_10674 34 RSRWTPKPEQILILESIFNSgMVNPPREETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 94 79***************99***********************************997 PP
2	Wus_type_Homeobox	106.3	2e-34	34	96	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtP+peQi iLe++++sG+++P++ee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q PEQU_10674 34 RSRWTPKPEQILILESIFNSGMVNPPREETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 96 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.515	30	95	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-14	31	101	IPR009057	Homeodomain-like
SMART	SM00389	6.2E-7	32	99	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	34	99	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-13	34	94	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDNNQPQEPT TNTVIPSSGE LPASRTNAVS DPIRSRWTPK PEQILILESI FNSGMVNPPR 60 EETVRIRKLL EKFGSVGDAN VFYWFQNRRS RSRRRQRQLQ ASLAAATSTY ESTAASCSSS 120 SLDAASLTSS FGSSPSSSSP PSSMGSVWCE SADDLFSISQ QMGFGDSTSS SNRICCRINT 180 EITIQNYNAG TVTVFINEIL TEVPRGPIDI RSMFGHDVLI VHSSGEFLPV NEYGILLQSL 240 QMGESYYLVI FIAKIAFY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269\|PubMed:26307379, ECO:0000269\|PubMed:29740464}.
UniProt	Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250\|UniProtKB:Q0D3I7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583066.1	1e-121	LOW QUALITY PROTEIN: WUSCHEL-related homeobox 11-like
Swissprot	B8B644	1e-65	WOX11_ORYSI; WUSCHEL-related homeobox 11
Swissprot	Q0D3I7	1e-65	WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBL	A0A2I0VSR5	7e-99	A0A2I0VSR5_9ASPA; WUSCHEL-related homeobox 11
STRING	GSMUA_Achr3P09460_001	2e-74	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-35	WUSCHEL related homeobox 11

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhao Y, et al. The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling. Plant Cell, 2015. 27(9): p. 2469-83 [PMID:26307379] Zhang T, et al. The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice. Front Plant Sci, 2018. 9: p. 523 [PMID:29740464]