PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10728
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 261aa    MW: 30088.9 Da    PI: 7.0631
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10728genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.62.4e-2511962102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw e+g+sfvv+ + efak++Lp+yFkh+nf+SFv      gF+k+  e+         weF+++ F+kgkk+ l++i+
    PEQU_10728  11 FLTKTYQLVDDPCTDHIVSWGEDGTSFVVWRPPEFAKDLLPNYFKHNNFSSFV------GFRKTVAER---------WEFANELFRKGKKDILSEIH 92 
                   9***************************************************9......*****9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    PEQU_10728  93 RRKT 96 
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-28388IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-45794IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-25894IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-121134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.4E-221194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-124961IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MESQKSVPAP FLTKTYQLVD DPCTDHIVSW GEDGTSFVVW RPPEFAKDLL PNYFKHNNFS  60
SFVGFRKTVA ERWEFANELF RKGKKDILSE IHRRKTPQIS QQYHHQHYYS PPTIHYQEEM  120
SRWIEPTSPL PNSDANKFIS ALTEDNERLR RKNSYLLSEL THMKQLCNDI IYFIQNHVSP  180
VPAEERQVNP RPCRIVEIGP SDNSAAPLLE VQCSKNHGSV EKVSKEPDGG IKLFGIPIKG  240
NNILQSEIGG KKDSEKEFFD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-1619611122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583107.10.0heat stress transcription factor B-4b-like
SwissprotQ9C6352e-74HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2I0X4K01e-118A0A2I0X4K0_9ASPA; Heat stress transcription factor B-4b
STRINGXP_008794230.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-74heat shock transcription factor B4