PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10866

Common Name

MYB8

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB

Protein Properties

Length: 219aa MW: 25295.3 Da PI: 7.786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10866	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W++ ++ g+ R++k+c++rw +yl PEQU_10866 14 KGAWTKEEDERLVAYIKEHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	59.1	9.5e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ PEQU_10866 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLQ-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.73	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.95E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	5.26E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.09	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	8.11E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIK EHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLQGRT DNEIKNYWNT HIRRKLLSRG 120 IDPTTHRPLH GQADLSFAKE EEKDESFVRR VEENKSNNSN SNSNSNSSSS SEEPKRWRCP 180 DLNLELGINP SSLKQEDSDE YFMGEELGLC FRNGLLEFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF769473	0.0	KF769473.1 Phalaenopsis equestris MYB transcription factor 8 (MYB8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020581730.1	1e-160	myb-related protein 308-like
Swissprot	P81393	2e-94	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A096ZX74	1e-156	A0A096ZX74_PHAEQ; MYB transcription factor 8
STRING	Gorai.002G196700.1	2e-98	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-90	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]