PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10878

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 59aa MW: 6707.76 Da PI: 7.44

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10878	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.8e-09	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+e d +lv +++++G+g+W++++ g PEQU_10878 14 KGPWTPEKDIILVSYIQEHGPGHWRAVPTNTG 45 79*************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-12	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.2E-8	8	43	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.082	9	59	IPR017930	Myb domain
Pfam	PF00249	5.9E-7	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-4	16	46	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
MGICPCCEKE GVKKGPWTPE KDIILVSYIQ EHGPGHWRAV PTNTGNIYSF SLHFLLNFF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008230764.1	2e-24	PREDICTED: myb-related protein 306
Swissprot	P81392	3e-23	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2P5D206	6e-23	A0A2P5D206_TREOI; MYB transcription factor
TrEMBL	A0A314UMX8	6e-23	A0A314UMX8_PRUYE; Myb-related protein 306
STRING	XP_008230764.1	9e-24	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	2e-25	myb domain protein 96

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]