PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_10916
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 450aa    MW: 51282.4 Da    PI: 8.706
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_10916genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-167683396
                -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv+ ++L +gD +vF   + +++el+v+v
  PEQU_10916  7 TQELSEKDLHGVEWRFKHIYRGQPRRHLLTTGWSTFVSCKRLVAGDAFVFL--RGKNGELRVGV 68
                4578889********************************************..34889999987 PP
2Auxin_resp91.81.2e-3096175183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++ ++ F+v+Y+Pr+  s+F+++++k+ +a+k+++++ mRfkm fet+d++e++++Gt+vg+ dl++ +W++SkW++Lk
  PEQU_10916  96 ASHALKVQTFFTVLYKPRT--SQFIISANKYFEAVKKEFAPCMRFKMTFETDDVPEKKYTGTIVGMGDLSS-QWEGSKWKQLK 175
                 6899**************6..9**********************************************777.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.603172IPR003340B3 DNA binding domain
SuperFamilySSF1019362.09E-21299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-22385IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-14768IPR003340B3 DNA binding domain
CDDcd100174.95E-121368No hitNo description
PfamPF065071.6E-2796175IPR010525Auxin response factor
PfamPF023092.9E-7362449IPR033389AUX/IAA domain
SuperFamilySSF542778.34E-10378449No hitNo description
PROSITE profilePS5174522.5383450IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSQPTPTQEL SEKDLHGVEW RFKHIYRGQP RRHLLTTGWS TFVSCKRLVA GDAFVFLRGK  60
NGELRVGVKH LARQKSSVPS SVISSHSMHI GVLATASHAL KVQTFFTVLY KPRTSQFIIS  120
ANKYFEAVKK EFAPCMRFKM TFETDDVPEK KYTGTIVGMG DLSSQWEGSK WKQLKVRWDE  180
QTNFHRPDRV SPWEIELYSP SMPTISTNKR PRSLMDHLDS QTFEASSPSW YSGMSFQHNG  240
IINGGLKHNS PSMNTKPLSS SASSPLKLFQ ELNQENKAFP PTRQSILGYV VEEQELNLSK  300
AKDEYNKPEI RGTYRLFGID LMKPSGFSSP AEKISASETM EEAKVLIFPA TESLDQHSEQ  360
KTMRKTEVVS PKEIQRKQNC STRSRIKVRM HGVAVGRAVD LMTLGGYDDL ILELEKMFEI  420
EGELSQRDKW EVVFTDDEDD IMLVGDDPWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-831202155362Auxin response factor 1
4ldw_A2e-831202155362Auxin response factor 1
4ldw_B2e-831202155362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020581740.10.0LOW QUALITY PROTEIN: auxin response factor 11-like
SwissprotQ5NB851e-134ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2I0VCK20.0A0A2I0VCK2_9ASPA; Auxin response factor
STRINGXP_008807235.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.21e-128auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]