PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11079

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 170aa MW: 19947.7 Da PI: 10.0745

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11079	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.2	9.4e-21	20	98	57	128
NAM 57 ewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +k+y+tg+rk+r+++ + +W++tgk++++++ +++++g kk+Lv+y g+ +k+ekt+Wvmh+y+l PEQU_11079 20 IRHFFHRPSKAYTTGNRKRRKVNtnelegETRWHKTGKTRPIFE-HKKVKGHKKILVLYtnYGKLKKPEKTNWVMHQYHL 98 359***************744446655788********.999*******6557999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.883	1	117	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-23	16	117	IPR003441	NAC domain
Pfam	PF02365	2.2E-8	22	98	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MNRSLIKILY MTGVTKDGLI RHFFHRPSKA YTTGNRKRRK VNTNELEGET RWHKTGKTRP 60 IFEHKKVKGH KKILVLYTNY GKLKKPEKTN WVMHQYHLGS DEEEKDGELV VSKIFYQTQP 120 RQCGSITLKD QLKDENVADC YNSSVMSYNI NREHDGADHF MHDFGSVSFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571377.1	1e-115	NAC domain-containing protein 10-like
Swissprot	O49459	6e-62	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2I0W1K3	3e-90	A0A2I0W1K3_9ASPA; NAC domain-containing protein 8
STRING	XP_008798265.1	1e-70	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	2e-64	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]