PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11163

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 209aa MW: 23049.7 Da PI: 5.5831

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11163	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.4e-40	8	104	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+lrrkC+++C++ap+fp++qp+kfa vh++FGasn+ kll++lp++ r+da+ slvyeA++r++dPv G+vg+il l+ ql++lk++l+++ PEQU_11163 8 PCAGCKFLRRKCQPNCIFAPHFPSNQPHKFADVHRVFGASNIAKLLNDLPPNLRDDAVLSLVYEAQMRLHDPVFGCVGIILVLEDQLQRLKSDLSRA 104 7*******************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-40	8	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSREPRPPCA GCKFLRRKCQ PNCIFAPHFP SNQPHKFADV HRVFGASNIA KLLNDLPPNL 60 RDDAVLSLVY EAQMRLHDPV FGCVGIILVL EDQLQRLKSD LSRAWGELMG LEMAAGMQEQ 120 QRMMMMMMMM AASGSGAVDD SGLVTGGSFG GQLGVAEAAG GDDEGYCGGI LFKILYTSEN 180 ILISETSHSW LSLFFRTHRI EIKLELDPD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-45	8	109	11	112	LOB family transfactor Ramosa2.1
5ly0_B	8e-45	8	109	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ730231	0.0	HQ730231.1 Phalaenopsis equestris clone PeWGSM081 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571441.1	1e-123	LOB domain-containing protein 6-like isoform X2
Refseq	XP_020597149.1	1e-123	LOB domain-containing protein 6-like isoform X2
TrEMBL	A0A2I0WWE5	8e-57	A0A2I0WWE5_9ASPA; LOB domain-containing protein 6
STRING	EMT24931	8e-45	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-37	LOB domain-containing protein 25