PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11247
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 252aa    MW: 29261.5 Da    PI: 4.4852
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11247genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-183487356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++ eq+++Le+ Fe +++++ e++ ++A +lgL+ rqV vWFqNrRa++k
  PEQU_11247 34 KKRRLSLEQVRALEKNFELENKLDPERKVRIALELGLQPRQVAVWFQNRRARWK 87
                4558999**********************************************9 PP
2HD-ZIP_I/II126.31.3e-4033125193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqv++LE++Fe e+kL+perKv++a eLglqprqvavWFqnrRAR+ktkqlE+dy+aL++++dal+ + ++L++++e L +e+ke
   PEQU_11247  33 EKKRRLSLEQVRALEKNFELENKLDPERKVRIALELGLQPRQVAVWFQNRRARWKTKQLERDYAALRNSFDALAIDCDSLRRDKEILLAEIKE 125
                  69*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-192691IPR009057Homeodomain-like
PROSITE profilePS5007117.0382989IPR001356Homeobox domain
SMARTSM003896.5E-183293IPR001356Homeobox domain
PfamPF000466.9E-163487IPR001356Homeobox domain
CDDcd000863.63E-163490No hitNo description
Gene3DG3DSA:1.10.10.602.7E-194188IPR009057Homeodomain-like
PRINTSPR000317.2E-56069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000317.2E-56985IPR000047Helix-turn-helix motif
PfamPF021831.1E-1489130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
AAKLPTIPDG VEKDEEEEEE ELFSGDLPSA AGEKKRRLSL EQVRALEKNF ELENKLDPER  60
KVRIALELGL QPRQVAVWFQ NRRARWKTKQ LERDYAALRN SFDALAIDCD SLRRDKEILL  120
AEIKEFKTKL GLSEEESESK MVKAEDPPPP AVYKDGSSDS DSSAVIYDEN SSYQSGMQLP  180
PELRCRPNEP EEPQRLMLSS GFDFHMNSEW RVQRSFFPKE EHNFLAGEEH SNDFFQDEQN  240
PVFTWYCSDH WS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020582410.10.0homeobox-leucine zipper protein HOX20-like
SwissprotA2YWC07e-55HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2487e-55HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2I0VWC31e-133A0A2I0VWC3_9ASPA; Homeobox-leucine zipper protein HOX20
STRINGXP_008795210.18e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-50homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]