PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11259

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 245aa MW: 26882.7 Da PI: 7.0871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11259	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	60	105	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq PEQU_11259 60 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 105 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.07E-11	53	109	No hit	No description
SuperFamily	SSF47459	2.36E-17	53	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.263	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-17	57	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-9	60	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-13	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MTCILDICFC LLQSEVANLK HLLGHSSNSH QPITQTNAIV CNVAAKPRVR ARRGQATDPH 60 SIAERLRREK IAERMKNLQE LVPNSNKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGAAG 120 AVVPLITDAQ AEDTGSLHLS PISQGADTLE SQDSLAFEQE VVKLMESSVT TAMQYLQNKG 180 LCLMPIALAT AISNPKGSAA SNPSDRRKQD LSERNDHLDE LNRCSGLSAK QEEFTQSMSN 240 GRLLQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020582483.1	1e-170	transcription factor bHLH66-like
Swissprot	Q9LSQ3	1e-64	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A2H3XIR6	2e-90	A0A2H3XIR6_PHODC; uncharacterized protein LOC103703328
TrEMBL	A0A2H3YEK7	7e-91	A0A2H3YEK7_PHODC; transcription factor bHLH10-like
STRING	XP_008784365.1	3e-91	(Phoenix dactylifera)
STRING	XP_008797366.1	1e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-67	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]