 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PEQU_11321 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
| Family |
HB-other |
| Protein Properties |
Length: 352aa MW: 39207.4 Da PI: 7.9366 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PEQU_11321 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 18.2 | 4.4e-06 | 41 | 61 | 36 | 56 |
HCTS-HHHHHHHHHHHHHHHH CS
Homeobox 36 klgLterqVkvWFqNrRakek 56
k+ ++ +qV +WFqNrR+ ++
PEQU_11321 41 KVIVQPKQVLNWFQNRRYAYR 61
347899***********9887 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
KVMEMETCLQ DVNNLSNSIP PRETICVLAE KFSMSAERAG KVIVQPKQVL NWFQNRRYAY 60
RAKVKEPAKL NVSPLPRDDP AQFRNVAPPL PTPQGKSSAR NGVGVYIGSN SSENVEVEFE 120
AKSLRDGAWY DVSAFLSYRM FETGDPEVRI RFTGFGVEED EWINVRKCVR QRSLPCEAGE 180
CVAVLPGDLI LCFQEGNEQA LYFDAHILDA QRRRHDVRGC RCRFLVRYDH DQSEEIVSLK 240
KICRRPETDR RLELLQSSIA PGSGSGSADA AGARSSKNPS QPHPSKDQNT MISKRTRKQR 300
KLVDVNVDEV MTIALPALSN LAVSAAPLIP TQDESPPVIG DNSNVAANHS LI
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 6e-48 | 116 | 247 | 3 | 134 | SHH1 SAWADEE |
| 4iur_B | 6e-48 | 116 | 247 | 3 | 134 | SHH1 SAWADEE |
| 4iut_A | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 6e-48 | 116 | 247 | 3 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-94 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
