PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11431
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family FAR1
Protein Properties Length: 270aa    MW: 31393.2 Da    PI: 10.2143
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11431genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.3e-21996290
        FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 Y++YA+ vGF+vrk+++++  ++++i+++++ C k+g+++e++ + ++ + ++a t tgC+a+++ + ++dg+w ++k+++ HnH+la
  PEQU_11431  9 HYCAYAHYVGFTVRKNHTTYWAKSKQIKSKDYICGKSGHKRESQLA-TTVKYRKADTLTGCQAMVRYSIDHDGNWTIKKFVESHNHPLA 96
                69****************************************9999.88888999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-18996IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.988156192IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-5165189IPR007527Zinc finger, SWIM-type
SMARTSM005758.2E-4167194IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
RNEKEAYKHY CAYAHYVGFT VRKNHTTYWA KSKQIKSKDY ICGKSGHKRE SQLATTVKYR  60
KADTLTGCQA MVRYSIDHDG NWTIKKFVES HNHPLAESGD KHLLRSSRRI TELNANVLRS  120
MTGSGIRAAD AFNFFATVHP NSMLEVWIIM IQVETWLVTF DRVNCDITCS CKKFKIKGLF  180
CSHCLHVFNV NNITKIPEKY LLFRWSAKAK KDIYNSFGYK YMKNPRAQMS DTTSKGILFR  240
SHAQKFVYQL INKVEGNKRV ETYIIESLKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597645.15e-83protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1212587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-11FAR1 family protein