PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11497

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 232aa MW: 25395.5 Da PI: 10.2069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11497	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ksF + L H +H PEQU_11497 123 YPCNICSKSFDSYQALGGHRTSH 145 99********9999998888777 PP
2	zf-C2H2	11.6	0.00089	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k Fs+ L H r+H PEQU_11497 175 HVCNICAKNFSSGQALGGHKRSH 197 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.53E-8	121	197	No hit	No description
SMART	SM00355	0.056	123	145	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.471	123	150	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-11	123	146	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.7	175	197	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.3E-10	175	198	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.055	175	198	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	177	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MKKKRTGSAP KIANASVFGF SSENCKEEVI AALCLLKLAR EDANLIYDST DKISLTIGSG 60 NKVHSFPSVD GYQQSKKLKV SSFASNSHHG DINPTVLKNE KKRLSIQCDS EFERQSSCNR 120 KRYPCNICSK SFDSYQALGG HRTSHNKGRG ESKRLINRNS DSQTVKKSPK NFGNHVCNIC 180 AKNFSSGQAL GGHKRSHSIA ADKSAAAVVV SNAHNTAHHP HPAPTEIEHN FF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020591066.1	1e-169	zinc finger protein ZAT9-like
STRING	XP_009761173.1	3e-18	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37536	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	5e-17	C2H2-like zinc finger protein