PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11675
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YC
Protein Properties Length: 144aa    MW: 15759.2 Da    PI: 11.0962
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11675genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC24.17.7e-08361161797
       NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                 ++ ++P+ ri + lka +   +i a aPv l+   e++  e+   + + a++nk+  +    i+ av + +    l+d+v 
  PEQU_11675  36 ADLRFPVGRIARFLKAGKYAGRIGAGAPVYLAAVLEYLAAEILELAGNAAKDNKKVRITPRHIQLAVRNDTELSKLMDNVT 116
                 36789*************************************999*************************99999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001254.7E-1816103IPR007125Histone H2A/H2B/H3
SMARTSM004145.8E-6617137IPR002119Histone H2A
Gene3DG3DSA:1.10.20.102.4E-5222135IPR009072Histone-fold
CDDcd000741.97E-5926132No hitNo description
PRINTSPR006204.6E-432850IPR002119Histone H2A
SuperFamilySSF471134.79E-4129132IPR009072Histone-fold
PRINTSPR006204.6E-435772IPR002119Histone H2A
PRINTSPR006204.6E-437285IPR002119Histone H2A
PRINTSPR006204.6E-4386100IPR002119Histone H2A
PfamPF162114.5E-7107138IPR032454Histone H2A, C-terminal domain
PRINTSPR006204.6E-43114132IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAGRGRGRGR GRGRGRKEKE TRSSEKKVKR SRSSKADLRF PVGRIARFLK AGKYAGRIGA  60
GAPVYLAAVL EYLAAEILEL AGNAAKDNKK VRITPRHIQL AVRNDTELSK LMDNVTIPSS  120
GVTPAIHCFL VPLSTEKEAF DDEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3c1b_C2e-49131362121Histone H2A type 1
3c1b_G2e-49131362121Histone H2A type 1
3c1c_C2e-49131362121Histone H2A type 1
3c1c_G2e-49131362121Histone H2A type 1
6ftx_C2e-49131363122Histone H2A type 1
6ftx_G2e-49131363122Histone H2A type 1
6g0l_G2e-49131363122Histone H2A type 1
6ne3_C2e-49131363122Histone H2A type 1
6ne3_G2e-49131363122Histone H2A type 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1514RGRGRGRGRG
2515RGRGRGRGRGR
Functional Description ? help Back to Top
Source Description
UniProtCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591255.11e-100histone H2A-beta, sperm-like
SwissprotO818262e-55H2A3_ARATH; Probable histone H2A.3
TrEMBLA0A2G5CFC35e-55A0A2G5CFC3_AQUCA; Histone H2A
TrEMBLA0A2P2Q6246e-55A0A2P2Q624_RHIMU; Histone H2A
STRINGAquca_058_00211.19e-56(Aquilegia coerulea)
Publications ? help Back to Top
  1. Yi H,Sardesai N,Fujinuma T,Chan CW,Gelvin SB
    Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members.
    Plant Cell, 2006. 18(7): p. 1575-89
    [PMID:16751347]
  2. Sridhar VV, et al.
    Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination.
    Nature, 2007. 447(7145): p. 735-8
    [PMID:17554311]