PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11690
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 714aa    MW: 78004.4 Da    PI: 6.6569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11690genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-203489156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q++e+e++F+++++p+ ++r+ L+k+lgL+  qVk+WFqN+R+++k
  PEQU_11690 34 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKALSKELGLEPLQVKFWFQNKRTQMK 89
                688999***********************************************999 PP
2START239.11.1e-742224451206
                 HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                 ela +a++el+++a+++ep+W++s+      e++n++e++q+f+++ +      ++ea+r+++vv+m +++lve+l+d + qW++++     + +tlev
  PEQU_11690 222 ELAVAAMEELIRMAQLGEPLWTSSPgldggnEILNEEEYVQNFPRGIGpkpfgLKSEASRETAVVIMSHVNLVEILMDAN-QWSTMFSgivsRGMTLEV 319
                 57899****************************************999********************************.****************** PP

                 ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 +s+g      galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+ds ++ +    ++R++++pSg+li++++ng+skv+wveh+++++r+
  PEQU_11690 320 LSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDSLRPSS---LMMRCRRRPSGCLIQEMPNGYSKVIWVEHFEVDDRS 415
                 *********************************************************965...6*********************************** PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 phwllrslvksglaegaktwvatlqrqcek 206
                 +h+++++lv+sg+a+gak+wv+tl+rqce+
  PEQU_11690 416 VHSIYKPLVNSGIAFGAKRWVSTLDRQCER 445
                 ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-221589IPR009057Homeodomain-like
SuperFamilySSF466892.55E-192191IPR009057Homeodomain-like
PROSITE profilePS5007116.5363191IPR001356Homeobox domain
SMARTSM003893.1E-193295IPR001356Homeobox domain
CDDcd000869.31E-193392No hitNo description
PfamPF000469.6E-183489IPR001356Homeobox domain
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PROSITE profilePS5084844.598213448IPR002913START domain
SuperFamilySSF559611.51E-37214447No hitNo description
CDDcd088751.36E-126217444No hitNo description
SMARTSM002341.5E-67222445IPR002913START domain
PfamPF018522.4E-59223445IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-6289444IPR023393START-like domain
SuperFamilySSF559614.26E-25464700No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MMRAREDDFE SKSGSDNIEG GSGDEHDPNQ RPRKKRYHRH TQHQIQEMEA FFKECPHPDD  60
KQRKALSKEL GLEPLQVKFW FQNKRTQMKT QHDRQENSQL RAENDKLRNE NLRYKEALSN  120
ASCPNCGGPA TLGEMSFDEH HLRIENARLR EEIDRISGIA AKYVGKPMNS YPLLSPTLPS  180
RSSLDLGVGG FGLHSPTMGG DMFSPARRPT GGRQAEKPMV IELAVAAMEE LIRMAQLGEP  240
LWTSSPGLDG GNEILNEEEY VQNFPRGIGP KPFGLKSEAS RETAVVIMSH VNLVEILMDA  300
NQWSTMFSGI VSRGMTLEVL STGVAGNYNG ALQVMTAEFQ VPSPLVPTRE SYFVRYCKQH  360
PDGTWAVVDV SLDSLRPSSL MMRCRRRPSG CLIQEMPNGY SKVIWVEHFE VDDRSVHSIY  420
KPLVNSGIAF GAKRWVSTLD RQCERLASVM ASSIPSGEIG VITTSEGRKS MLKLAERMVL  480
SFCGGVSAST THQWTTLSGS GAEDVRVMTR KSVDDPGRPP GIVLNAATSF WLPVSPKRVF  540
DFLRDESSRS EWDILSNGGV VQEMAHIANG RDHGNCVSLL RVNSTNSNQS NMLILQESCT  600
DPTGSYVIYA PVDVVAMNVV LNGGDPDYVA LLPSGFAILP DGSNGVHGGG SGIGEVGSGG  660
GSLLTVAFQI LVDSIPTAKL SLGSVATVNS LIACTVERIK AAVTGRVPNE PKGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPSU347430.0U34743.1 Phalaenopsis sp. 'hybrid SM9108' homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591278.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC2-like
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLQ409880.0Q40988_9ASPA; Homeobox protein
STRINGXP_008784552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]