PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11711
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 572aa    MW: 62407.8 Da    PI: 5.1413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11711genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.61e-1372035721373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++ ++ + l++++s las++g +m+++a yf++ALa+r++r        l+p+++ + +s+ +   +  f+e +P+lkf+h+taN
  PEQU_11711 203 LVHALMACAEAVQQENYKASDVLVKQISMLASSQGGAMRKVAGYFAQALARRIYR--------LNPQQDCSLDSAFSDILQMHFYESCPYLKFAHFTAN 293
                 689****************************************************........88888886666666666667**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g p+++++++l+++g++La++A++++v+fe++ +va++l+dle+ +L+  p
  PEQU_11711 294 QAILEAFAGCRRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGLPQPDNTDALQQVGWKLAQLADTIHVDFEYRGFVANSLADLEPYMLESPP 392
                 ***********************************************************************************************7777 PP

        GRAS 199 ........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                          E++aVn+v++lhrll++++sle+    vL +v  ++P++v++veqea+hn+++F+erf+eal++ys++fdslea+  +e ++++++++++
  PEQU_11711 393 sanitsdePEVVAVNSVFELHRLLAKPASLEK----VLATVLAVKPRIVTIVEQEANHNTGTFMERFTEALHFYSTMFDSLEAGGFAEGHQDQVMSEVY 487
                 777777779***********************....*********************************************88877778999999**** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 lgr+i+nvvacegaer+erhetl++Wr r+e aGF+pv+l+++a kqa++ll+ +  ++gyrvee++g+l+lgW++rpL+++SaW
  PEQU_11711 488 LGRQICNVVACEGAERTERHETLSHWRGRMEGAGFEPVHLGSNAFKQASMLLALFTgGEGYRVEEKEGCLTLGWHTRPLIATSAW 572
                 ************************************************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.4E-31676IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.4E-30682No hitNo description
PROSITE profilePS5098567.347177552IPR005202Transcription factor GRAS
PfamPF035143.6E-135203572IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
DEETNDELLA VLGYKVRSSD MEIVAQKLQQ LEMAMGGSAP HDDELLSHLA VDTVHYNPSD  60
LSNWLENMLS ELSTPPLPLP PVMHPNSVVF DLPPAPILAT MDSTVTSIEL SAPSATMLRS  120
NYALRTTNTS GNRAVYGSET QMDGTGPRDR KRMKTSSSSS SSRGGSGGVI GRAAPSMSST  180
CGSEVSSAMP VVMVDTQEVG IRLVHALMAC AEAVQQENYK ASDVLVKQIS MLASSQGGAM  240
RKVAGYFAQA LARRIYRLNP QQDCSLDSAF SDILQMHFYE SCPYLKFAHF TANQAILEAF  300
AGCRRVHVID FSMKQGMQWP ALLQALALRP GGPPSFRLTG IGLPQPDNTD ALQQVGWKLA  360
QLADTIHVDF EYRGFVANSL ADLEPYMLES PPSANITSDE PEVVAVNSVF ELHRLLAKPA  420
SLEKVLATVL AVKPRIVTIV EQEANHNTGT FMERFTEALH FYSTMFDSLE AGGFAEGHQD  480
QVMSEVYLGR QICNVVACEG AERTERHETL SHWRGRMEGA GFEPVHLGSN AFKQASMLLA  540
LFTGGEGYRV EEKEGCLTLG WHTRPLIATS AW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6221057226378Protein SCARECROW
5b3h_A3e-6221057225377Protein SCARECROW
5b3h_D3e-6221057225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591296.10.0LOW QUALITY PROTEIN: DELLA protein DWARF8-like
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A2I0VD310.0A0A2I0VD31_9ASPA; DELLA protein DWARF8
STRINGXP_008782281.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]