PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11753

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 223aa MW: 25540.6 Da PI: 9.55

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11753	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.9	6.3e-12	120	209	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k ++ s+v+ +l l+k+f+++h ++++ tl de+ ++ + + k++ l++GW++F a++L +gD +vF+l++ + f+ v + PEQU_11753 120 FVKPMLISHVTGGFWLGLSKQFCTSHLP--NRDTWFTLIDEDDEETQTLYLAPKTG----LSAGWRGFSIAHELVDGDALVFHLIKPTAFKVIVAL 209 8999********************53..467789***9999999444444....9**********************98999887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.0E-15	111	207	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-19	113	207	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.67E-19	118	207	No hit	No description
Pfam	PF02362	5.0E-9	120	210	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-11	120	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
TYEEVRRRKL EENKKKLEEL NLGHLTIALR EAVSPKTSPA KPLKRKAQSL PGQFVIRRRS 60 DRIANLPEQS YKEVVLTFVL LVFRRTDLAN RVYASDEARE YATEKALELQ SQLDPTHPSF 120 VKPMLISHVT GGFWLGLSKQ FCTSHLPNRD TWFTLIDEDD EETQTLYLAP KTGLSAGWRG 180 FSIAHELVDG DALVFHLIKP TAFKVIVALF YLLIIFFTVV LKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020591264.1	1e-142	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	3e-73	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2I0XHV1	1e-119	A0A2I0XHV1_9ASPA; B3 domain-containing protein
STRING	XP_008788064.1	4e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-57	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]