PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_11792

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 163aa MW: 18093.6 Da PI: 9.4038

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11792	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.2	4.2e-36	6	101	2	97
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 CaaCk++rrkC+++C+lap fpa++p+ f n+h+lFG s+++k+l++l+ + r++a++s++++++ara+dP G+++++l+lq ++ +a l+++ PEQU_11792 6 CAACKYQRRKCSPNCILAPFFPADKPQIFLNTHRLFGLSKIIKILNSLEANARPEAIRSIIFQSNARAQDPAGGCYRIVLQLQDSIQLYRARLDHV 101 ***************************************************************************************999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.781	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-34	6	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
XSPPTCAACK YQRRKCSPNC ILAPFFPADK PQIFLNTHRL FGLSKIIKIL NSLEANARPE 60 AIRSIIFQSN ARAQDPAGGC YRIVLQLQDS IQLYRARLDH VLRRISAIRE RAQILQAETS 120 GSCDQDLEQC LNSGAIARQP GEVYNGGSEV RGVPIQGDVK LRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-25	6	99	12	105	LOB family transfactor Ramosa2.1
5ly0_B	4e-25	6	99	12	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583717.1	1e-115	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	8e-35	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A199VQR8	4e-37	A0A199VQR8_ANACO; LOB domain-containing protein 22
TrEMBL	A0A2C9UXW9	1e-37	A0A2C9UXW9_MANES; Uncharacterized protein
TrEMBL	A0A2H3X816	3e-37	A0A2H3X816_PHODC; LOB domain-containing protein 7-like
STRING	cassava4.1_022118m	2e-38	(Manihot esculenta)
STRING	XP_008779803.1	4e-38	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-37	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]