PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11929
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-X1
Protein Properties Length: 866aa    MW: 96181.5 Da    PI: 8.4004
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11929genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.32.1e-05183201120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG H C  lCH+G CppCp+
  PEQU_11929 183 CG-HECLLLCHPGACPPCPK 201
                 **.***************96 PP
2zf-NF-X118.25.5e-06416441120
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                 CG      +HkC +lCH+G C pCp+
  PEQU_11929 416 CGrklrcnNHKCPSLCHRGSCAPCPL 441
                 666666669***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.81478140IPR019787Zinc finger, PHD-finger
SuperFamilySSF578502.12E-680145No hitNo description
PROSITE patternPS01359081137IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.31781138IPR001841Zinc finger, RING-type
CDDcd060083.83E-6171220No hitNo description
SMARTSM004380.037183201IPR000967Zinc finger, NF-X1-type
CDDcd060082.90E-9225273No hitNo description
SMARTSM004380.035235254IPR000967Zinc finger, NF-X1-type
CDDcd060081.92E-7278327No hitNo description
SMARTSM004380.011288307IPR000967Zinc finger, NF-X1-type
CDDcd060081.98E-8332381No hitNo description
SMARTSM004383.4342362IPR000967Zinc finger, NF-X1-type
SMARTSM004380.037395414IPR000967Zinc finger, NF-X1-type
CDDcd060083.33E-11412459No hitNo description
SMARTSM004380.0019422441IPR000967Zinc finger, NF-X1-type
SMARTSM0043828485500IPR000967Zinc finger, NF-X1-type
SMARTSM00438170508526IPR000967Zinc finger, NF-X1-type
SMARTSM004385.9590618IPR000967Zinc finger, NF-X1-type
SMARTSM0043817631649IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62694715IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MAYAAALRPP SDLTPFLSDS DSGSTSGGDE AAAVSRASPL EDSIFAAYLQ IYGGGSPSLD  60
LIKIRSFLSA AAGRGGHFVS CLICLERIRP SDPVWSCSSG CHALFHLPCI QNWANQCSHR  120
PTSSSSLHSS DWHCPKCRIS YVRDMIPRSY RCFCGKLEDP PSDPWILPHS CGEVCGRPLR  180
GNCGHECLLL CHPGACPPCP KLVTARCFCG SQKDARRCAQ KHFSCNQVCS KLLPCRTHLC  240
IERCHDGPCP PCQVKALYKC ACGKTEEERV CAESEFRCDR PCNGILGCGK HKCGRGCHSG  300
SCGACPLEGR RTCPCGKKEY KGVSCDEIVP TCGLTCEKML SCGFHRCPER CHRGICVETC  360
RIVVLKACRC GSLKKEVPCH QDLICERKCL RMRDCGRHAC KRRCCDGECP SCQEICGRKL  420
RCNNHKCPSL CHRGSCAPCP LMVTISCFCG ETYFEVPCGV EKNQRPPKCP KACHVSRLCK  480
HQFQCRPHKC HYGACPPCRI ICGEEHPCGH SCKHRCHGPI PPPNPVFTLK PKKKKMEKIL  540
GVTPGLACPT CEEIIWVACL GQHIGEERPM VCSKKAQFSC NNLCGSLLSC GNHYCTKPCH  600
AVKYQPSSLD ENEKPCEECL LPCEKVREPA CSHPCPLRCH CDSCPPCEVL LKRSCHCGAM  660
VHVFKCTDYN GLNEKEQQLI RSCRGPCHRK LPNCPHLCSE LCHPGQCPSV NLCSKKVTVR  720
CACNSLKKEW LCRDAQNFYR ETGRDSKDVV KNLFGVGLIP CNADCKSKVK TTDAELLIRK  780
VQVPKDTETV VAAVTKRKKR RDRVQVTQQV SKFQAFRSVL QKCLLFSILL IVICGSLYYG  840
YKGLFCLSDW MYEMEKRKAR KGFSRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1796802RKKRRDR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578841.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2I0B4G10.0A0A2I0B4G1_9ASPA; NF-X1-type zinc finger protein NFXL2
STRINGXP_008793296.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors