PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12448
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YB
Protein Properties Length: 108aa    MW: 12303.1 Da    PI: 7.7911
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12448genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB112.62.2e-351781794
       NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                mk+vlP++akisk+ak+t+qec+sefi+f+t+easdkc++e+r+t++g+d+++a+  lG+++y+ + k yl+kyre  
  PEQU_12448  1 MKQVLPSKAKISKEAKQTMQECASEFIAFITGEASDKCRKENRQTLSGEDICHAMKLLGLDKYACSAKSYLQKYREHC 78
                9**************************************************************************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-32191IPR009072Histone-fold
PfamPF008081.1E-17155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.38E-26187IPR009072Histone-fold
PRINTSPR006151.3E-121937No hitNo description
PRINTSPR006151.3E-123856No hitNo description
PRINTSPR006151.3E-125775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MKQVLPSKAK ISKEAKQTMQ ECASEFIAFI TGEASDKCRK ENRQTLSGED ICHAMKLLGL  60
DKYACSAKSY LQKYREHCEK SEAIKNTEPM ETDMTDMLQI YCKGNQHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-271761792Transcription factor HapC (Eurofung)
4g92_B7e-271761792Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580614.11e-75transcriptional activator hap3-like
SwissprotO822488e-32NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2I0XBB54e-45A0A2I0XBB5_9ASPA; Nuclear transcription factor Y subunit B-5
STRINGPavir.Eb03825.1.p9e-35(Panicum virgatum)
STRINGXP_008796244.19e-35(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-34nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]