PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12449
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NF-YB
Protein Properties Length: 95aa    MW: 11073 Da    PI: 9.9561
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12449genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB99.72.3e-31286893
       NF-YB  8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                l ian+++imkkvlP +akisk+ake++q+c sef++f+  easdkc++e+r+t+ gdd ++a+  + +++y+   k yl+k+re 
  PEQU_12449  2 LLIANIGKIMKKVLPPKAKISKKAKEIMQNCPSEFMAFIP-EASDKCHKENRQTLGGDDTYHAMKLIELDKYAFFTKRYLHKHREH 86
                679***********************************95.9******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-27288IPR009072Histone-fold
SuperFamilySSF471135.24E-21288IPR009072Histone-fold
PfamPF008081.4E-13464IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
LLLIANIGKI MKKVLPPKAK ISKKAKEIMQ NCPSEFMAFI PEASDKCHKE NRQTLGGDDT  60
YHAMKLIELD KYAFFTKRYL HKHREHCEKL EATRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-22185792Transcription factor HapC (Eurofung)
4g92_B2e-22185792Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580614.14e-40transcriptional activator hap3-like
SwissprotO040278e-30NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2I0XBB52e-32A0A2I0XBB5_9ASPA; Nuclear transcription factor Y subunit B-5
STRINGAquca_003_00805.18e-31(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.13e-32nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]