PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12460
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 150aa    MW: 17091.2 Da    PI: 4.5553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12460genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-053052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ Cg+ F++   L  H+++H
  PEQU_12460 30 YPCSFCGREFRSAQALGGHMNVH 52
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-72757No hitNo description
Gene3DG3DSA:3.30.160.601.6E-42854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-72953IPR007087Zinc finger, C2H2
SMARTSM003550.00253052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0713057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDSRSWEEKA FAEDTAGVLG GGCVWPPRAY PCSFCGREFR SAQALGGHMN VHRRDRARMK  60
QSLIVQVAEE DEQEDLLNPN PNPNPNFCDF GEEMRLGEMD FIRLMKRNLD EEEDEIEGSF  120
QKKKKNSVSP GMAEETLDLE LRLGDLPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-142552229superman protein
2l1o_A8e-142552229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020690609.14e-70probable transcriptional regulator RABBIT EARS
TrEMBLA0A2I0WU509e-69A0A2I0WU50_9ASPA; Putative transcriptional regulator RABBIT EARS
STRINGGorai.013G022000.14e-31(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-26C2H2 family protein