PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_12630

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C3H

Protein Properties

Length: 392aa MW: 43021.4 Da PI: 8.2667

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12630	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++tG C yG++C+++H+ PEQU_12630 1 MKTGLCAYGSNCRYNHP 17 89**************9 PP
2	zf-CCCH	32.7	1.3e-10	36	60	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+++G Ck+G++Ck++H++ PEQU_12630 36 QPDCQYFLKNGMCKFGATCKYHHPR 60 789********************96 PP
3	zf-CCCH	38	2.7e-12	82	105	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f+rtGtCkyG CkF+H++ PEQU_12630 82 KSCPYFMRTGTCKYGIVCKFNHPQ 105 56********************97 PP
4	zf-CCCH	35	2.4e-11	252	277	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ Ck++H++ PEQU_12630 252 DQPECQYYMKTGSCKFGSICKYHHPK 277 689*********************96 PP
5	zf-CCCH	23.5	9.8e-08	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ GtC+yG+ CkF H++ PEQU_12630 296 PGEPVCSYYIFHGTCRYGPVCKFDHPF 322 57899********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	4.9E-5	1	17	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	88	1	18	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.906	1	19	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-6	33	60	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.14	33	61	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-7	36	60	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-6	37	62	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-4	39	61	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-6	78	106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.685	78	106	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-5	80	105	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-9	82	105	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-5	83	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-4	250	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.962	250	278	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.1E-9	252	277	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	254	278	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.7E-4	256	277	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0072	295	322	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.441	295	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.45	306	321	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MKTGLCAYGS NCRYNHPTHL EQGTQDKGEL PQRVGQPDCQ YFLKNGMCKF GATCKYHHPR 60 DRRDAQHVPL NALGLPIRQD QKSCPYFMRT GTCKYGIVCK FNHPQPATFG PVLPLTGFPT 120 YGSTMASAAL TSNLPLAGVS SHHSQNLAAY MSVFLPSFPG TMPVQQGWPA YMVRIDCSET 180 DCGTIGVDAP DPLSSSPASL SCTVTSGKSS NFTNSDPSAL FQKLHHPSLM PNSNNSAQSS 240 LSSTENFPER PDQPECQYYM KTGSCKFGSI CKYHHPKERS SICTSTLSPL GLPLRPGEPV 300 CSYYIFHGTC RYGPVCKFDH PFVGYYNMPA TYYTDSVTHL PNQRNTTKTM KSEMNNGVLS 360 ANSNKEDKNS STHASSMLHI SPSSESTQNN LN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MKTGLCAYGS NCRYNHPTHL EQGTQDKGEL PQRVGQPDCQ YFLKNGMCKF GATCKYHHPR  60
DRRDAQHVPL NALGLPIRQD QKSCPYFMRT GTCKYGIVCK FNHPQPATFG PVLPLTGFPT  120
YGSTMASAAL TSNLPLAGVS SHHSQNLAAY MSVFLPSFPG TMPVQQGWPA YMVRIDCSET  180
DCGTIGVDAP DPLSSSPASL SCTVTSGKSS NFTNSDPSAL FQKLHHPSLM PNSNNSAQSS  240
LSSTENFPER PDQPECQYYM KTGSCKFGSI CKYHHPKERS SICTSTLSPL GLPLRPGEPV  300
CSYYIFHGTC RYGPVCKFDH PFVGYYNMPA TYYTDSVTHL PNQRNTTKTM KSEMNNGVLS  360
ANSNKEDKNS STHASSMLHI SPSSESTQNN LN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020582787.1	0.0	zinc finger CCCH domain-containing protein 33-like isoform X1
Refseq	XP_020582788.1	0.0	zinc finger CCCH domain-containing protein 33-like isoform X2
Refseq	XP_020582790.1	0.0	zinc finger CCCH domain-containing protein 33-like isoform X4
TrEMBL	A0A2I0AM92	1e-133	A0A2I0AM92_9ASPA; Zinc finger CCCH domain-containing protein 3
STRING	XP_008803512.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1153	38	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-76	zinc finger protein 1