PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12686
Common NameSEP4
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28377.6 Da    PI: 8.8393
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12686genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.93.2e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaev +i+fs++g+l+e++s
  PEQU_12686  9 KMIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIVFSNRGRLFEFCS 59
                68***********************************************96 PP
2K-box97.81.6e-32781735100
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + ++  ++++++ +qe+ kLk+++e Lqr+qR+llGedL  L+ keL+qLe++Le slkkiRs+K++l+l+q+ +l++ke++lqe+nkaLr+kl+e
  PEQU_12686  78 TETRIPSKETQNNYQEYLKLKAKVEYLQRSQRNLLGEDLALLTTKELEQLEHELEMSLKKIRSTKSQLMLDQLCDLKRKEQMLQEANKALRMKLQE 173
                 445578999************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.76E-42276No hitNo description
SuperFamilySSF554553.53E-33287IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014869.4E-2884171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.16587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKM IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVGLIVFSN RGRLFEFCSS  60
SSMMKTIERY QKCSYNTTET RIPSKETQNN YQEYLKLKAK VEYLQRSQRN LLGEDLALLT  120
TKELEQLEHE LEMSLKKIRS TKSQLMLDQL CDLKRKEQML QEANKALRMK LQEDEPEMPL  180
QLSWSGGRTA GNARSPCGRQ PQSDVFFQPL PCDPTLQIGY NPICIEEQLN NGSSSHNING  240
FLPGWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-27751731103Developmental protein SEPALLATA 3
4ox0_B6e-27751731103Developmental protein SEPALLATA 3
4ox0_C6e-27751731103Developmental protein SEPALLATA 3
4ox0_D6e-27751731103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738600.0KF673860.1 Phalaenopsis equestris SEPALLATA-like MADS-box protein 4 (SEP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572941.10.0MADS-box protein CMB1-like isoform X1
SwissprotQ8LLR21e-112MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLX5DD290.0X5DD29_PHAEQ; SEPALLATA-like MADS-box protein 4
STRINGXP_008811033.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-98MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Pan ZJ, et al.
    Flower development of Phalaenopsis orchid involves functionally divergent SEPALLATA-like genes.
    New Phytol., 2014. 202(3): p. 1024-42
    [PMID:24571782]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]