PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_12751

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 234aa MW: 26464.4 Da PI: 8.2844

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12751	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.3e-06	1	21	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+sF+++ L H+r H PEQU_12751 1 CNVCGRSFPTRRALGGHMRIH 21 *******************99 PP
2	zf-C2H2	18.2	6.6e-06	55	75	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F+++s+L +H + H PEQU_12751 55 CSKCGEKFRSWSSLFNHTKFH 75 ******************998 PP
3	zf-C2H2	14.5	0.0001	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg++F++ L H +H PEQU_12751 209 YNCKTCGRTFPTYQALGGHRARH 231 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	1	21	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.8E-6	1	21	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-4	1	21	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.42E-9	1	21	No hit	No description
SMART	SM00355	2.2	1	21	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.907	1	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.42E-9	48	75	No hit	No description
PROSITE profile	PS50157	10.637	53	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	1	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.61E-5	206	232	No hit	No description
Pfam	PF13912	1.4E-12	208	233	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.014	209	234	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.048	209	231	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	211	231	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
CNVCGRSFPT RRALGGHMRI HLLPNSDKEP MSRYGFRVNP RKTWKLMENE NDMLCSKCGE 60 KFRSWSSLFN HTKFHSETEG DQLREEDEDF EEKNMNSNRN GSYEEGGDGI ETQSDSEVNA 120 MERSGSLGSS IAYEIEQTAG AFCLMMLSRG AGSVTDSSDK ASVVTDDEVE KRKSNSVSEF 180 SLKLRKSKAS SRRKDLHYVA SGIEKQSRYN CKTCGRTFPT YQALGGHRAR HMRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572963.1	1e-166	zinc finger protein ZAT9-like
TrEMBL	A0A2I0WTX2	5e-63	A0A2I0WTX2_9ASPA; Zinc finger protein ZAT1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-12	C2H2-like zinc finger protein