PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12752
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 178aa    MW: 19729.9 Da    PI: 10.9202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12752genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000715375123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ Cg++F +   L  H  +H
  PEQU_12752 53 YSCKTCGRTFLTYQALGGHRARH 75
                99********9999998888887 PP
2zf-C2H215.55.1e-05102124123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cgk+F +   L  H r+H
  PEQU_12752 102 HECSICGKVFASGQALGGHKRRH 124
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-1052124No hitNo description
SMARTSM003550.195375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.185380IPR007087Zinc finger, C2H2
PfamPF139125.8E-105377IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-498124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.018102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429102124IPR007087Zinc finger, C2H2
PfamPF139121.6E-12102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRVRNGKLSN GHEKVQSFPS ESEFSLKLKK SKASSHRKDL HYVASGIEKK NRYSCKTCGR  60
TFLTYQALGG HRARHMRIKV PSFSEVLATK ELNIQNHGSK LHECSICGKV FASGQALGGH  120
KRRHLVAADN AASTPAPADA VQASAAVTAN MEQISYVSAR LISTFQLWKM KVMMIMRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595961.11e-113zinc finger protein ZAT9-like
SwissprotQ681X42e-19ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2I0WTX25e-41A0A2I0WTX2_9ASPA; Zinc finger protein ZAT1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-21C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]