PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_12754

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 237aa MW: 26746.7 Da PI: 8.4798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12754	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	3	24	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C +sF+++ L H+r H PEQU_12754 3 SCNVCERSFPTRRALGGHMRIH 24 6*******************99 PP
2	zf-C2H2	19	3.7e-06	58	78	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ Fs++s+L +H + H PEQU_12754 58 CSKCGEKFSSWSSLFNHTKFH 78 ******************998 PP
3	zf-C2H2	13.9	0.00016	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg++F++ L H +H PEQU_12754 212 YNCKTCGRTFPSYQALGGHRARH 234 89*************99999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.039	2	24	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.39	2	29	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.84E-9	3	24	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.0E-4	4	24	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.8E-5	4	24	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	4	24	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.84E-9	51	78	No hit	No description
SMART	SM00355	0.88	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.803	56	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.9E-5	209	235	No hit	No description
Pfam	PF13912	7.3E-13	211	236	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.055	212	237	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.043	212	234	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	214	234	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
RPSCNVCERS FPTRRALGGH MRIHLLPNSD KEPMRRYGFR VNPRKTWKLM ENENDMLCSK 60 CGEKFSSWSS LFNHTKFHSE TEGDQLREED EEFAEKNKNS NSNGSYEEGG DGIETQSDSE 120 VNAMERSGSL GSSIAYEIEQ TAGAFCLMML SRGAGSVTDS SDKASVVTDD EVEKRKSNSV 180 SEFSLKLRKS KASSRRKDLH YVASGIEKQS RYNCKTCGRT FPSYQALGGH RARHMRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572973.1	1e-169	zinc finger protein ZAT9-like
TrEMBL	A0A2I0WTX2	2e-62	A0A2I0WTX2_9ASPA; Zinc finger protein ZAT1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-12	C2H2-like zinc finger protein