PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_12926

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 104aa MW: 12303.1 Da PI: 11.0063

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12926	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.8	9.1e-14	3	47	18	57
HHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 lF r+ps+e++++++ +l +++ ++V++WFqN++a+e++ PEQU_12926 3 LFSAgLRTPSTEQIQKISYHLssfgKIENKNVFYWFQNHKARERH 47 6776689************************************95 PP
2	Wus_type_Homeobox	80.6	1.9e-26	2	48	18	64
Wus_type_Homeobox 18 elyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +l+++GlrtP++e+iq+i+ +L+++Gkie+kNVfyWFQN+kaRer++ PEQU_12926 2 DLFSAGLRTPSTEQIQKISYHLSSFGKIENKNVFYWFQNHKARERHH 48 69*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.989	1	48	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-11	3	47	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.23E-7	9	51	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-4	13	52	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MDLFSAGLRT PSTEQIQKIS YHLSSFGKIE NKNVFYWFQN HKARERHHHP QKKRRRPPPA 60 PTSPVHSELF VIEPSEHRKF PVTKLSGLSS YHSKDVKYLR RILL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576529.1	7e-59	WUSCHEL-related homeobox 9-like
Swissprot	Q8W0F1	2e-27	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	A0A2I0VSA7	5e-49	A0A2I0VSA7_9ASPA; WUSCHEL-related homeobox 9
STRING	OGLUM01G41580.1	7e-26	(Oryza glumipatula)
STRING	LPERR01G32330.1	7e-26	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05770.1	3e-21	WUSCHEL related homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]