PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12996
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 143aa    MW: 15154.3 Da    PI: 8.2318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12996genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000375779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C +C +sFs+   L  H r+H
  PEQU_12996 57 HQCLICFRSFSTGQALGGHKRRH 79
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.82E-55381No hitNo description
PROSITE profilePS501578.7465779IPR007087Zinc finger, C2H2
PfamPF139121.1E-85781IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MLSRTTSEQN IGHSCXXXXX XXXXXXXXXX XXXXLSPPAD DRISGGSAVL IAGGRGHQCL  60
ICFRSFSTGQ ALGGHKRRHY DGTIGSAAGT GSAIGGCGRG LGFDLNLPAA AEFAGGAGWR  120
CLEEEEEVRG SFPLKKPRFF LTV
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590043.18e-68zinc finger protein 1-like
SwissprotQ424305e-18ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2I0VSB22e-48A0A2I0VSB2_9ASPA; Zinc finger protein ZAT10
STRINGXP_008792675.12e-21(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-14salt tolerance zinc finger