PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13094
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 223aa    MW: 25455.7 Da    PI: 6.0499
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-056385123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ Cg+ F++   L  H+++H
  PEQU_13094 63 YSCSFCGREFRSAQALGGHMNVH 85
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.42E-76089No hitNo description
Gene3DG3DSA:3.30.160.601.7E-46187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0026385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.2176390IPR007087Zinc finger, C2H2
PfamPF139122.7E-66386IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEQAKYWMWT RRKFPASPPL FDSLTRTPIP SASVFYNQSW EEKAFAEDSA GLLGGCVWPP  60
RSYSCSFCGR EFRSAQALGG HMNVHRRDRA RLKQSSMVGE DDIDDRHHIN IGVPNPSPNP  120
NFGVDVSLAQ VALFSPPSRK VVNDVNYSAI HCLWGEELKL GSKRRLDKEE EDKNSNKRMK  180
MNSFLVDEEK LQEYAEDEVI NLSPEKVEDL DLELRLGDLP KVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135885229superman protein
2l1o_A2e-135885229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590209.11e-166transcriptional regulator SUPERMAN-like
TrEMBLA0A2I0WAY31e-120A0A2I0WAY3_9ASPA; Putative transcriptional regulator RABBIT EARS
STRINGGSMUA_Achr10P02390_0014e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-27C2H2 family protein