PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13180
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 115aa    MW: 13390.3 Da    PI: 7.0063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13180genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.12.2e-3321151128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGf F P+deel++++L++k++  +++  ++i+++++ +++PwdL+ k+ ++ ++wyfFs+r +        nrat +gyWk+ g d++v++     
  PEQU_13180   2 LPPGFCFFPSDEELLHHFLRPKASLLPCHP-DIIPTLNLRHFDPWDLHCKAFKGGNHWYFFSHRTE--------NRATPNGYWKHMGVDETVKD----- 86 
                 79*************************999.99**************966667789******9855........89****************98..... PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kktLvf+ g + +g ktdW+m+ey l
  PEQU_13180  87 VGVKKTLVFHIGGEAEGIKTDWIMQEYCL 115
                 ***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-411115IPR003441NAC domain
PROSITE profilePS5100534.1262115IPR003441NAC domain
PfamPF023656.4E-233115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
NLPPGFCFFP SDEELLHHFL RPKASLLPCH PDIIPTLNLR HFDPWDLHCK AFKGGNHWYF  60
FSHRTENRAT PNGYWKHMGV DETVKDVGVK KTLVFHIGGE AEGIKTDWIM QEYCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-30111514140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020588046.18e-84NAC domain-containing protein 104-like
SwissprotQ8GWK68e-44NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2I0WC113e-64A0A2I0WC11_9ASPA; NAC transcription factor NAM-B2
STRINGPavir.Ga01785.1.p2e-50(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-46xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]