PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13277
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 217aa    MW: 24334.2 Da    PI: 4.7816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13277genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172475156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                ++++GVr+++ +gr+ AeIrdp+    r  r +lg++ taeeAa  +++a+ kl+g+
  PEQU_13277 24 PRFRGVRRRP-WGRFSAEIRDPV----RrVRLWLGTYSTAEEAAMVYDRAAIKLRGP 75
                689*******.**********63....45*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.31E-312484No hitNo description
PfamPF008472.5E-112474IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-212583IPR016177DNA-binding domain
PROSITE profilePS5103223.132582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-292583IPR001471AP2/ERF domain
SMARTSM003802.7E-352588IPR001471AP2/ERF domain
PRINTSPR003675.6E-92637IPR001471AP2/ERF domain
PRINTSPR003675.6E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNGKKKKQRK QLPENLPRSP EKLPRFRGVR RRPWGRFSAE IRDPVRRVRL WLGTYSTAEE  60
AAMVYDRAAI KLRGPNASTN FPNLAFPANS ATSTPANMNF PSSSGYESSE DSRNVSISSP  120
TTVLHGLSSD VVERETELKD DFNAFDGVLQ CNDFLGDDFM VFDRMPDWGE FMNAESYGPR  180
RCEEFAGERI CAGGGVCEEG DDLFAGITDL FPLEPFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192282263ATERF1
3gcc_A2e-192282263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576823.11e-160pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO823392e-27CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A2I0XFK96e-72A0A2I0XFK9_9ASPA; Ethylene-responsive transcription factor CRF4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.25e-19cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]