PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13386
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 485aa    MW: 54201.5 Da    PI: 6.3093
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13386genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092923291954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +e+  LA+++gLt +qV++WF N R +
  PEQU_13386 292 FEHflHPYPKDSEKLMLARQTGLTRSQVSNWFINARVR 329
                 665559******************************88 PP
2BELL95.44.9e-31163228172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erqe q+k akL+++++eVd++Ykqy++q+q+v+ssF++vag+g+akp      ++iSrhFrcL+dai+ qi
  PEQU_13386 163 ERQEFQSKLAKLVEMVDEVDRKYKQYYHQMQVVMSSFDVVAGVGAAKP------QTISRHFRCLRDAITAQI 228
                 79*********************************************9......89**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-3686226IPR006563POX domain
PfamPF075261.6E-3394225IPR006563POX domain
PROSITE profilePS5007112.228270333IPR001356Homeobox domain
SMARTSM003897.0E-10273337IPR001356Homeobox domain
CDDcd000862.06E-12273334No hitNo description
SuperFamilySSF466891.2E-17274339IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28276339IPR009057Homeodomain-like
PfamPF059201.2E-17290329IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
TNDDSQLSIL SGHNFSLSSS TMQGQGLSLS LGTQVSVPTF HYLPATADIS FSVPNQTTSL  60
SDESCKKSSL MKHAQVNSSH PNVPYLMNST LNLNYLKATR ELLDEVVNAR KALIQKNGKS  120
SAFGNSGGFS ECKDADFGSE TGEIPLMFKD DTASERREIS ASERQEFQSK LAKLVEMVDE  180
VDRKYKQYYH QMQVVMSSFD VVAGVGAAKP QTISRHFRCL RDAITAQIQS IRKILGEHEN  240
GDSVRLCRLR YIDQELRQRR VVQQYGILQP HAWRPQRGLP ENSVSILRAW LFEHFLHPYP  300
KDSEKLMLAR QTGLTRSQVS NWFINARVRL WKPMIEEMHK EELGDVDADS KSSPEKLQKL  360
QDDARCSADK DEDPQSSDAE NFRLSHSDEP SKSNPINDLD TCGSDAHFDH KSRDEKSIGE  420
ESNLMQTNLS NPDDVSGRIM AYQMAELGQY GTGAVSLTLG LPHWGSNLPA SNGQHSFVSV  480
RGADV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-17279340566Homeobox protein Meis2
3k2a_B8e-17279340566Homeobox protein Meis2
4xrm_A8e-17279337563Homeobox protein Meis2
4xrm_B8e-17279337563Homeobox protein Meis2
4xrs_A7e-17279336158Homeobox protein Meis1
4xrs_B7e-17279336158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586438.10.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-105BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2I0XIB90.0A0A2I0XIB9_9ASPA; BEL1-like homeodomain protein 6
STRINGXP_008812196.11e-171(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-107BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]