PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13544
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 204aa    MW: 23474.3 Da    PI: 8.2117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13544genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l +++ ++G g+W+  a++ g++Rt+k+c++rw++yl
       PEQU_13544 15 RGPWTVEEDLILTNYISKHGEGRWNYLAKCAGLKRTGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding54.13.6e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       PEQU_13544  68 RGNITAEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8331062IPR017930Myb domain
SuperFamilySSF466891.8E-3113109IPR009057Homeodomain-like
SMARTSM007172.2E-141464IPR001005SANT/Myb domain
PfamPF002496.0E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-241669IPR009057Homeodomain-like
CDDcd001674.45E-111762No hitNo description
PROSITE profilePS5129424.42363117IPR017930Myb domain
SMARTSM007171.5E-1567115IPR001005SANT/Myb domain
PfamPF002497.7E-1668111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2470115IPR009057Homeodomain-like
CDDcd001671.11E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEIEKQQSTA EELRRGPWTV EEDLILTNYI SKHGEGRWNY LAKCAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITAEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRLQKHANVL  120
EGMRALMGRP PWHGVSEGQS SLATSNSGGD LSNSSSTSNC YYNYLDERGE GCWPSKPEGW  180
LDFSPLPDFD SNMLAGFCQH NALY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-26611518126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573454.11e-151myb-related protein 340-like
SwissprotQ2QZJ81e-66JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A455LAB35e-75A0A455LAB3_9ASPA; Transcription factor MYB78-like protein
STRINGOGLUM07G26960.14e-67(Oryza glumipatula)
STRINGOS07T0688200-014e-67(Oryza sativa)
STRINGONIVA07G26740.14e-67(Oryza nivara)
STRINGORGLA07G0213800.14e-67(Oryza glaberrima)
STRINGOBART07G26990.14e-67(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-65myb domain protein 62
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]